biology computation

Definition

Morphogenesis

Morphogenesis is the biological process that causes an organism to develop its shape. It involves the organised spatial distribution of cells during embryonic development, driven by genetic instructions and environmental signals to form complex structures and patterns.

Computational Perspective

In his seminal 1952 paper, The Chemical Basis of Morphogenesis, Alan Turing proposed that morphogenesis could be understood as a form of distributed, massively parallel computation. He demonstrated that systems of reacting and diffusing chemicals—which he termed morphogens—could spontaneously form stable patterns such as spots, stripes, and segments.

Intuition

Morphogenesis represents a “bottom-up” approach to construction. Rather than following a centralised blueprint, every cell executes the same genetic “program” (DNA) while sensing its local environment (morphogen concentrations) to determine its state and function.

Mechanisms

  • Reaction-Diffusion Systems: Mathematical models showing how the interaction of two chemicals (an activator and an inhibitor) diffusing at different rates can create spatial periodicity.
  • Morphogen Gradients: Chemical concentrations that provide positional information to cells, influencing gene expression based on the local threshold.
  • Hox Genes: A group of related genes that specify regions of the body plan of an embryo along the head-tail axis.

Observation

The identification of the “Bicoid” protein by Christiane Nüsslein-Volhard provided the first empirical evidence for Turing’s theoretical morphogens, establishing a bridge between mathematical theory and molecular biology.